My Software
Some links to software that was written by myself and my lab. I'm particularly interested in developing software that is accessible and intuitive for use in the broader scientific community. These days, I find myself working mostly in Rust, Python, and TypeScript to develop fast, scalable machine learning and bioinformatics tools. Here are some of the projects I've worked on:
textractor
A rust crate for extracting text from various file types. Includes wasm bindings for in-browser use.
gtars
A Rust library for performance-critical genomic interval operations.
PEPhub
Open sourced biological metadata server that promotes sharing and reproduction of sample-intensive experiments.
geniml
A python package for working with and training machine learning models on genomic data.
optipyzer
Multi-species codon optimization server written in python.
spottydata
Spotify playlist analyzer for the web. Built with nextjs and python.